Package: smartsnp 1.1.0

smartsnp: Fast Multivariate Analyses of Big Genomic Data

Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).

Authors:Salvador Herrando-Perez [aut], Ray Tobler [ctb], Christian Huber [ctb, cre]

smartsnp_1.1.0.tar.gz
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smartsnp.pdf |smartsnp.html✨
smartsnp/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/christianhuber/smartsnp/issues

On CRAN:

5 exports 6 stars 1.40 score 45 dependencies 2 scripts 265 downloads

Last updated 8 months agofrom:01e53da532. Checks:OK: 1 NOTE: 5 WARNING: 3. Indexed: yes.

Exports:read_packedancestrymapsmart_mvasmart_pcasmart_permanovasmart_permdisp

Dependencies:bitbit64bootSVDcliclustercodetoolscpp11crayondata.tablefansiffforeachgluehmsiteratorslatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepillarpkgconfigprettyunitsprogressR6RcppRcppArmadilloRcppEigenRcppGSLRcppParallelRcppZigguratRfastrlangRSpectratibbletidyselecttzdbutf8vctrsveganvroomwithr